The RegularotyNetwork object is the core data structure in Pando. It stores all data necessary for network inference and analysis that is not provided by Seurat.

Slots

genes

A named list containing the transcription factors and target genes included in the network.

regions

A Regions object containing information about the genomic regions included in the network.

network

A Network object containing the inferred regulatory network and information about the model fit.

params

A list storing parameters for GRN inference.

active_network

A string indicating the active network.