Initiate the RegulatoryNetwork object. — initiate

Initiate the RegulatoryNetwork object.

initiate_grn(object, ...)

# S3 method for Seurat
initiate_grn(
  object,
  regions = NULL,
  peak_assay = "peaks",
  rna_assay = "RNA",
  exclude_exons = TRUE
)

Arguments

regions	Candidate regions to consider for binding site inference. If `NULL`, all peaks regions are considered.
peak_assay	A character vector indicating the name of the chromatin accessibility assay in the `Seurat` object.
rna_assay	A character vector indicating the name of the gene expression assay in the `Seurat` object.
exclude_exons	Logical. Whether to consider exons for binding site inference.

Value

A SeuratPlus object containing a RegulatoryNetwork object.